AlignmentFilter
AlignmentFilterMetric
AlignmentFilterMetric.SQ
BamIndexDecoder
BamMerger
BamQualityQuantisation
BamReadTrimmer
BamTagStripper
BamUtils
BCLFileReader
ChangeBamHeader
CLocsFileReader
FilterFileReader
Illumina2bam
IlluminaFileReader
IndexDecoder
IndexDecoder.BarcodeMatch
IndexDecoder.BarcodeMetric
IndexDecoder.NamedBarcode
Lane
LocsFileReader
PicardCommandLine
PosFileReader
PositionFileReader
PositionFileReader.Position
SCLFileReader
SplitBamByReadGroup
Tile
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