uk.ac.sanger.npg.illumina.file.reader
Class PosFileReader

java.lang.Object
  uk.ac.sanger.npg.illumina.file.reader.IlluminaFileReader
      uk.ac.sanger.npg.illumina.file.reader.PositionFileReader
          uk.ac.sanger.npg.illumina.file.reader.PosFileReader

All Implemented Interfaces:

java.io.Closeable, java.util.Iterator<java.lang.Object>

public class PosFileReader
extends PositionFileReader

Nested Class Summary

Nested classes/interfaces inherited from class uk.ac.sanger.npg.illumina.file.reader.PositionFileReader

PositionFileReader.Position

Field Summary

Fields inherited from class uk.ac.sanger.npg.illumina.file.reader.PositionFileReader

currentTotalClusters

Fields inherited from class uk.ac.sanger.npg.illumina.file.reader.IlluminaFileReader

fileName, inputStream

Constructor Summary

PosFileReader(java.lang.String fileName)

Method Summary

void	close() close file input stream
int	getTotalCluster()
boolean	hasNext()
static void	main(java.lang.String[] args)
PositionFileReader.Position	next()

Methods inherited from class uk.ac.sanger.npg.illumina.file.reader.PositionFileReader

getCurrentTotalClusters

Methods inherited from class uk.ac.sanger.npg.illumina.file.reader.IlluminaFileReader

getFileName, readFourBytes, readFourBytes, remove

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PosFileReader

public PosFileReader(java.lang.String fileName)
              throws java.io.FileNotFoundException

Parameters:

fileName -

Throws:

java.io.FileNotFoundException

Method Detail

next

public PositionFileReader.Position next()

Specified by:

next in interface java.util.Iterator<java.lang.Object>

Specified by:

next in class PositionFileReader

Returns:

cluster position coordinates as an array

hasNext

public boolean hasNext()

Specified by:

hasNext in interface java.util.Iterator<java.lang.Object>

Overrides:

hasNext in class IlluminaFileReader

close

public void close()

Description copied from class: IlluminaFileReader

close file input stream

Specified by:

close in interface java.io.Closeable

Overrides:

close in class IlluminaFileReader

getTotalCluster

public int getTotalCluster()

Returns:

the totalCluster

main

public static void main(java.lang.String[] args)

Parameters:

args -