A B C D E F G H I K L M N O P Q R S T U V W X Y

U

uk.ac.sanger.npg.bam.util - package uk.ac.sanger.npg.bam.util

uk.ac.sanger.npg.illumina - package uk.ac.sanger.npg.illumina

uk.ac.sanger.npg.illumina.file.reader - package uk.ac.sanger.npg.illumina.file.reader

uk.ac.sanger.npg.picard - package uk.ac.sanger.npg.picard

USAGE - Variable in class uk.ac.sanger.npg.illumina.Illumina2bam

USAGE - Variable in class uk.ac.sanger.npg.picard.AlignmentFilter

USAGE - Variable in class uk.ac.sanger.npg.picard.BamIndexDecoder

USAGE - Variable in class uk.ac.sanger.npg.picard.BamMerger

USAGE - Variable in class uk.ac.sanger.npg.picard.BamQualityQuantisation

USAGE - Variable in class uk.ac.sanger.npg.picard.BamReadTrimmer

USAGE - Variable in class uk.ac.sanger.npg.picard.BamTagStripper

USAGE - Variable in class uk.ac.sanger.npg.picard.ChangeBamHeader

USAGE - Variable in class uk.ac.sanger.npg.picard.SplitBamByReadGroup

USE_OLD_QUALITY - Variable in class uk.ac.sanger.npg.picard.BamQualityQuantisation

Quantise original quality scores from OQ tag in bam record and set the results as new qualities if true